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Table 2 Differentially expressed genes that are specific to the African strain MAI1 of Xanthomonas oryzae pv. oryzae (Xoo)

From: In planta gene expression analysis of Xanthomonas oryzae pathovar oryzae, African strain MAI1

GenBank accession

Library origin†

Seq. no. ‡

Putative function

Organism §

E-value

Size

Time point||

Xanthomonas oryzae genome¶

       

1

3

6

MAFF 311018

KACC 10331

PXO 99A

BLS 256

BAI3

Biological Process Unknown

FI978294

1

1

No protein match (NPM)

-

-

1203

-

  

-

-

-

-

-

FI978293

1

1

NPM

-

-

974

 

+

+

-

-

-

-

-

FI978295

1

1

NPM

-

-

1233

  

+

-

-

-

-

-

FI978297

1

1

NPM

-

-

906

  

+

-

-

-

-

-

FI978298

1

1

NPM

-

-

975

 

+

 

-

-

-

-

-

FI978299

1

1

NPM

-

-

1499

  

+

-

-

-

-

-

FI978300

1

1

NPM

-

-

1122

 

-

 

-

-

-

-

-

FI978301

1

1

NPM

-

-

1659

 

+

 

-

-

-

-

-

FI978302

1

1

NPM

-

-

674

-

 

-

-

-

-

-

-

FI978303

1

1

NPM

-

-

1232

  

+

-

-

-

-

-

FI978101

1

1

NPM

-

-

409

  

+

-

-

-

-

-

FI978177

1

1

NPM

-

-

399

  

+

-

-

-

-

-

FI978197

1

1

NPM

-

-

248

  

-

-

-

-

-

-

FI978310

1

1

NPM

-

-

942

  

+

-

-

-

-

-

FI978308

1

1

NPM

-

-

931

  

+

-

-

-

-

-

FI978317

1

1

NPM

-

-

1175

 

+

 

-

-

-

-

-

FI978273

1

7

NPM

-

-

897

  

+

-

-

-

-

-

FI978320

1

1

NPM

-

-

1471

  

-

-

-

-

-

-

FI978321

1

1

NPM

-

-

1902

  

-

-

-

-

-

-

FI978086

1

1

NPM

-

-

544

-

 

-

-

-

-

-

-

FI978068

1

1

NPM

-

-

638

-

+

+

-

-

-

-

-

FI978327

2

1

NPM

-

-

876

-

 

-

-

-

-

-

-

FI978316

2

1

NPM

-

-

1157

 

+

+

-

-

-

-

-

FI978296

2

1

NPM

-

-

1529

+

  

-

-

-

-

-

FI978323

1

1

NPM

-

-

933

  

-

-

-

-

-

-

FI978322

2

1

NPM

-

-

861

  

+

-

-

-

-

-

Hypothetical protein

FI978307

2

1

Hypothetical protein XCC2965

Xcc strain ATCC 33913

3.0E 12

835

-

  

-

-

-

-

-

FI978239

1 and 2

2

Hypothetical protein XCC2966

Xcc strain ATCC 33913

7.0E 11

244

+

  

-

-

-

-

-

Phage-related and IS elements

FI978271

1

7

Gene transfer agent (GTA) like protein

Parvibaculum lavamentivorans strain DS 1

8.0E 50

788

 

+

 

-

-

-

-

-

Metabolism

FI978324

1

1

Haemolysin III

Xcc

5.0E 17

853

-

  

-

-

-

-

-

  1. †SSH library and/or libraries in which the clone was identified, where 1 corresponds to SSH library Xoo strain M1/PXO86, and 2 to SSH library Xoo strain M1/Xoc BLS256.
  2. ‡Number of sequences by contig, where 1 indicates singleton.
  3. §Xcc is Xanthomonas campestris pv. campestris; Xoo is Xanthomonas oryzae pv. oryzae.
  4. ||Time point, in days after inoculation, where + indicates up-regulated, and - indicates down-regulated.
  5. ¶Xanthomonas oryzae genomes, where + indicates presence of gene homologues to Xoo MAI1 in the genome analysed, and - indicates absence.
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