BME Loci | Gene Function | Exponential Growth Phase Change (fold) | Stationary Growth Phase Change (fold) | STM | ||||
---|---|---|---|---|---|---|---|---|
 |  | Δ vjbR /wt | wt + AHL/wt | Δ vjbR /Δ vjbR + AHL | Δ vjbR /wt | wt + AHL/wt | Δ vjbR /Δ vjbR + AHL |  |
Cell Membrane | ||||||||
I 1873 | Autotransporter Adhesin | -2.2 | - | - | - | - | - | Â |
II 1069 | Adhesin, AidA | -1.5†| - | - | -1.5 | - | - |  |
I 0402 | 31 KDa OMP Precursor | - | 1.5†| - | -1.7 | -1.7†| - |  |
I 0330 | OpgC Protein | - | -2.0 | -1.9†| - | - | - |  |
I 0671 | Integral Membrane Protein, Hemolysin | - | -2.7 | -2.2†| - | - | - | [28] |
II 1070 | Adhesin AidA-I | 1.7 | - | - | - | - | -1.9†|  |
I 1304 | Porin, F Precursor | - | - | -3.6†| -3.5 | -2.0 | -2.6†|  |
I 1305 | Porin | - | -2.3 | -1.8†| -1.5†| - | - |  |
Cell Motility | ||||||||
II 0151 | Flagellar M-Ring Protein, FliF | -2.2 | -2.1 | - | 2.1†| - | - | |
II 0161 | Flagellar Hook-Associated Protein 3 | -1.8†| -2.7 | - | - | - | - |  |
II 0165 | Flagellar Biosynthesis Protein | -1.9†| -2.8 | - | - | - | - |  |
I 1692 | Flagellar Protein, FlgJ | - | - | -2.3†| -1.8 | -2.1 | -3.4†|  |
II 0160 | Flagellar Hook-Associated Protein, FlgK | -1.6†| -2.0 | -1.7†| - | - | - |  |
II 0162 | FlaF Protein | -2.1 | -2.0†| - | - | - | -1.6†|  |
II 0167 | Flagellar Biosynthesis Protein, FlhA | -1.6†| -2.3 | -1.8†| -1.5†| -1.9†| -5.5†|  |
II 1109 | Chemotaxis Protein, MotA | -1.6†| 2.0†| -3.6†| -1.7 | -1.5†| - |  |
Protease and Lipoprotein | ||||||||
I 0611 | HflC Protein, Stomatin, Prohibitin, Flotillin, HflK-C Domains | -1.6 | - | - | - | -1.7†| - |  |
I 1079 | Lipoprotein NlpD | - | -1.5†| -1.6†| -1.6†| -1.9 | - |  |
I 1799 | Lipoprotein Signal Peptidase | 2.2 | 2.1†| - | - | -1.6†| - |  |
II 0831 | Hypothetical Protein, Aminopeptidase-Like Domain | -1.6†| -2.0 | - | -2.3 | - | 3.1†|  |
I 0213 | Metalloendopeptidase | -1.7†| -2.7†| -1.6†| 2.1 | - | - |  |
I 0282 | Zinc Metalloprotease | -1.8 | -1.7 | - | - | - | 3.4†|  |
II 0149 | Extracellular Serine Protease | -3.2 | -1.8 | 2.9†| - | -1.7 | - |  |
Secretion System | ||||||||
I 0390 | VceA | -1.4†| -1.3†| - | - | -1.2†| - |  |
I 0948 | VceC | 1.1†| 1.4†| - | 1.6†| 1.3†| - |  |
I 1094 | Exopolysaccharide Production Negative Regulator Precursor, Tetratricopeptide Repeat | - | - | - | 2.1 | 1.5†| - |  |
I 1141 | Predicted Exported Protein | -1.6 | -1.7 | - | - | - | - | Â |
I 1531 | Tetratricopeptide Repeat Family Protein | -2.1 | -2.4 | - | -1.7 | - | - | [34] |
I 1077 | Hypothetical Exported Protein, YajC | -1.5 | -2.1 | - | -1.8†| -1.5†| 1.8†|  |
II 0025 | Attachment Mediating Protein VirB1 | -2.2 | -1.9 | - | -2.6 | -2.2 | - | |
II 0026 | Attachment Mediating Protein VirB2 | - | -2.1 | - | -4.3 | -3.6 | -1.3†| |
II 0027 | Channel Protein VirB3 | - | - | - | -3.9 | -3.2 | - | |
II 0029 | Attachment Mediating Protein VirB5 | -2.0 | - | 1.6†| -5.7 | -4.5 | -1.2†| |
II 0030 | Channel Protein VirB6 | - | - | -1.7†| -2.8 | -2.3 | - | |
II 0032 | Channel Protein VirB8 | -1.6†| - | 1.1†| -3.3 | -2.6 | - | |
II 0033 | Channel Protein VirB9 | - | - | - | -1.8 | -1.9 | - | |
II 0034 | Channel Protein VirB10 | - | -1.5 | - | -2.0 | -1.9 | - | |
II 0036 | OMP, OprF, VirB12 | - | - | - | -1.7 | -1.7 | - | |
II 0466 | Tetratricopeptide Repeat Family Protein | - | 2.3 | 2.2†| -1.5†| - | - |  |
Signal Transduction | ||||||||
II 0011 | Transcriptional Regulatory Protein, HydG | -1.5†| -2.0 | - | - | - | - | [31] |
II 1014 | Two Component Response Regulator | - | 1.7†| - | 1.6 | -1.5†| - |  |
I 0370 | Sensory Transduction Histidine Kinase | -1.7 | -2.1 | -2.2†| -1.6†| - | 2.1†|  |
I 0372 | Two-Component Response Regulator | 1.6†| - | -1.5†| 1.5†| 1.8 | - |  |
I 2034 | Sensor Protein, ChvG | - | -1.7 | -2.4†| -2.0 | -1.6 | - |  |
Stress Response | ||||||||
I 0887 | Peptidyl-Prolyl Cis-Trans Isomerase | - | -1.7 | - | 1.7 | 1.6 | - | Â |
I 1619 | Hsp33-Like Chaperonin | - | - | - | 1.8 | 1.6†| - |  |
II 0245 | Universal Stress Protein Family, UspA | -1.8 | -1.7 | -2.0†| -2.5 | -2.5 | - |  |