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Table 2 Specificity test.

From: High taxonomic level fingerprint of the human intestinal microbiota by Ligase Detection Reaction - Universal Array approach

DNA Target Positive signal SNR other SNR spec p-valus spec
B. fragilis ATCC25285 Bacterodes/Prevotella 0.85 30.81 9.35E-05
   0.53 21.45 7.39E-04
B. thetaiotaomicrom ATCC29143 Bacterodes/Prevotella 0.45 61.44 2.56E-04
   1.66 347.24 9.10E-06
L. gasseri DSM20243 Lactobacillaceae 0.30 5.58 4.98E-03
   1.56 20.59 6.58E-03
P. melaninogenica ATCC25845 Bacterodes/Prevotella 1.54 480.24 6.02E-08
   0.90 266.63 3.74E-09
B. subtilis DSM704 Bacillus subtilis 7.93 637.39 1.56E-09
   5.62 350.10 1.47E-05
E. coli ATCC11105 Enterobacteriaceae 3.27 555.04 8.65E-08
   2.59 222.39 4.50E-07
P. mirabilis DSM4479 Proteus, Enterobacteriaceae 2.42 703.22 7.74E-09
   2.03 497.10 1.97E-09
B. bifidum DSM20456 Bifidobacteriaceae 2.67 289.39 4.78E-11
   2.23 407.10 2.40E-08
L. casei DSM20011 Lactobacillaceae, L. casei 2.59 125.13 1.01E-04
   2.26 134.78 5.92E-04
Y. enterocolitica (faecal isolate) Yersinia enterocolitica, Enterobacteriaceae 1.53 231.33 1.01E-05
   2.89 340.20 1.61E-06
B. cereus DSM31 Bacillus cereus 2.83 193.85 1.53E-06
   2.49 196.82 4.16E-03
B. adolescentis ATCC15703 Bifidobacteriaceae 4.10 732.95 3.95E-10
   2.90 338.59 5.59E-07
L. ramnosus DSM20021 Lactobacillaceae, L. casei 2.40 101.76 1.41E-03
   4.23 177.70 4.62E-07
L. delbrueckii DSM20074 Lactobacillaceae 3.77 210.11 2.24E-08
   3.10 121.93 6.27E-08
L. pentosus DSM20314 Lactobacillaceae 3.05 131.65 4.58E-09
   1.63 58.30 5.32E-07
L. acidophilus DSM20079 Lactobacillaceae 2.39 68.49 8.70E-05
   2.66 78.50 5.88E-06
L. reuteri DSM20016 Lactobacillaceae 3.17 150.57 4.66E-09
   1.74 83.60 1.98E-07
L. plantarum DSM21074 Lactobacillaceae, L. plantarum 2.12 197.32 3.79E-09
   2.09 148.35 2.77E-08
C. difficile ATCCBAA1382 Clostridium XI, Clostridium difficile 1.12 238.87 4.88E-04
   0.80 126.38 1.96E-03
C. jejuni ATCC33292 Campylobacter jejuni 0.70 19.89 5.29E-03
   0.91 28.44 5.69E-03
V. parvula ATCC10790 Veillonella, Clostridium IX 1.12 205.66 1.57E-04
   0.99 140.95 1.39E-04
B. breve DSM20091 Bifidobacteriaceae 2.22 570.01 6.22E-05
   1.69 289.07 2.72E-04
B. longum ATCC15707 Bifidobacteriaceae, B. longum 1.76 341.94 1.64E-03
   0.66 134.86 4.26E-02
R. productus ATCC 23340 Clostridium XIVa 0.64 4.21 1.41E-03
   1.06 17.16 1.24E-06
L. salivarius SV2 Lactobacillaceae, L. salivarius 0.89 12.23 4.34E-04
   0.65 7.27 2.69E-05
E. faecalis ATCC700802 E. faecalis 3.12 306.51 1.09E-03
   2.27 217.16 6.56E-03
C. leptum DSM73 Ruminocuccos bromii Clostridium IV 2.28 88.89 5.52E-07
   1.13 39.86 2.00E-07
R. albus DSM20455 Ruminocuccos albus Clostridium IV 1.46 47.05 2.50E-07
   1.41 32.01 4.37E-06
  1. Table reporting the results of the tests to assess probe specificity: 28 bacterial DNA targets were chosen to validate the probe pairs. For each DNA analyzed we report: probe pair showing significant signals, SNRs, SNRns (see main text for acronym definitions). The p-values of specific probes are reported for each duplicate experiment. Where needed (i.e. more than one probe pair was present), data are the average of the positive signals (for both SNRs and p-values)