Daria Szymanowska-Powalowska, Poznan University of Life Sciences
8 February 2016
Bakun M, Karczmarski J, Poznanski J, Rubel T, Rozga M, Malinowska A, Sands D, Hennig E, Oledzki J, Ostrowski J, Dadlez M: An integrated LC-ESI-MS platform for quantitation of serum peptide ladders. Application for colon carcinoma study. Prot Clin Appl 2009, 3: 932–946.
Malinowska A, Kistowski M, Bakun M, Rubel T, Tkaczyk M, Mierzejewska J, Dadlez M: Diffprot-software for non-parametric statistical analysis of differential proteomics data, J Proteomics 2012, 75: 4062-4073.
Competing interests
None declared
Materials and Methods section
Daria Szymanowska-Powalowska, None declared
8 February 2016
the Protein analyses subsection
Competing interests
The mass calibration and data filtering were carried out with MScan software, developed in-house http://proteom.ibb.waw.pl/mscan/.
A more detailed description of the quantitative extraction procedure implemented by our in-house software is available in Bakun et al., 2009.
Statistical significance was assessed with an in-house software Diffprot (Malinowska et al., 2012).
Acknowledgments section
Daria Szymanowska-Powalowska, Poznan University of Life Sciences
8 February 2016
The proteomic analysis was performed in cooperation with the Laboratory of Mass Spectrometry, Institute of Biochemistry and Biophysics, Polish Academy of Sciences.
Additional references
8 February 2016
Bakun M, Karczmarski J, Poznanski J, Rubel T, Rozga M, Malinowska A, Sands D, Hennig E, Oledzki J, Ostrowski J, Dadlez M: An integrated LC-ESI-MS platform for quantitation of serum peptide ladders. Application for colon carcinoma study. Prot Clin Appl 2009, 3: 932–946.
Malinowska A, Kistowski M, Bakun M, Rubel T, Tkaczyk M, Mierzejewska J, Dadlez M: Diffprot-software for non-parametric statistical analysis of differential proteomics data, J Proteomics 2012, 75: 4062-4073.
Competing interests
None declaredMaterials and Methods section
8 February 2016
the Protein analyses subsectionCompeting interests
The mass calibration and data filtering were carried out with MScan software, developed in-house http://proteom.ibb.waw.pl/mscan/.
A more detailed description of the quantitative extraction procedure implemented by our in-house software is available in Bakun et al., 2009.
Statistical significance was assessed with an in-house software Diffprot (Malinowska et al., 2012).
Acknowledgments section
8 February 2016
The proteomic analysis was performed in cooperation with the Laboratory of Mass Spectrometry, Institute of Biochemistry and Biophysics, Polish Academy of Sciences.
Competing interests
None declared